No. words: 1140; after pruning: 1114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.3 (1,1:529)  514  0.00 0.00 0.19  UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1        3   530 (37)  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   (46)   527     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   573 
   94    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1    50 
  102  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   472 
  118    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1    74 
  134  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   440 
  146    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   102 
  166  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   408 
  194    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   150 
  246  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   328 
  254    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   210 
  342  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   232 
  362    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   318 
  386  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   188 
  390    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   346 
  402  C UCD034R_E02_BE500206Ta23P028G01P036F111R1_008.ab1   172 
  406    UCD034F_E02_BE500206Ta23P028G01P036F111F1_008.ab1   362 
Contig length: old 610, new 611

Contig length: old 611, new 611
New start: 0