No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.7 (1,1:460)  434  0.00 0.44 0.44  UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1        5   462 (53)  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   (53)   458     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   511 
   82    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1    31 
   86  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   426 
  162    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   111 
  166  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   346 
  178    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   127 
  182  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   330 
  234    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   183 
  238  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   274 
  338    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   287 
  350  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   162 
  386    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   335 
  390  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1   122 
  398    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   347 
  418  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1    94 
  422    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   371 
  426  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1    86 
  434    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   383 
  446  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1    66 
  454    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   403 
  474  C UCD034R_G03_BE500206Td01P036H11P028G071R1_019.ab1    38 
  478    UCD034F_G03_BE500206Td01P036H11P028G071F1_019.ab1   427 
Contig length: old 565, new 566

Contig length: old 566, new 566
New start: 0