No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:448)  427  0.00 0.45 0.22  UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1        2   449 (51)  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   (53)   449     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   502 
  110    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1    56 
  122  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   381 
  130    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1    76 
  134  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   369 
  190    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   136 
  198  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   305 
  234    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   180 
  242  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   261 
  310    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   256 
  318  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1   185 
  406    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   352 
  442  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1    61 
  454    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   400 
  474  C UCD034R_H03_BE500206Td02P036H11P028G071R1_017.ab1    29 
  478    UCD034F_H03_BE500206Td02P036H11P028G071F1_017.ab1   424 
Contig length: old 553, new 554

Contig length: old 554, new 554
New start: 0