No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:443)  432  0.00 0.00 0.23  UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1        1   444 (60)  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   (61)   443     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   504 
  125    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1    64 
  133  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   372 
  161    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   100 
  165  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   340 
  225    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   164 
  229  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   276 
  233    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   172 
  237  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   268 
  293    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   232 
  297  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   208 
  337    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   276 
  341  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   164 
  349    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   288 
  353  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   152 
  361    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   300 
  365  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1   140 
  393    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   332 
  425  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1    80 
  433    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   372 
  445  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1    60 
  453    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   392 
  457  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1    48 
  461    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   400 
  465  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1    40 
  469    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   408 
  473  C UCD034R_A04_BE500206Td03P036H11P028G071R1_032.ab1    32 
  481    UCD034F_A04_BE500206Td03P036H11P028G071F1_032.ab1   420 
Contig length: old 564, new 565

Contig length: old 565, new 565
New start: 0