No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:445)  418  0.22 0.90 0.00  UCD034F_B04_BE500206Td04P036H11P028G071F1_030.ab1        1   445 (74)  C UCD034R_B04_BE500206Td04P036H11P028G071R1_030.ab1   (36)   449     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD034R_B04_BE500206Td04P036H11P028G071R1_030.ab1   485 
  339    UCD034F_B04_BE500206Td04P036H11P028G071F1_030.ab1   300 
  343  C UCD034R_B04_BE500206Td04P036H11P028G071R1_030.ab1   143 
  391    UCD034F_B04_BE500206Td04P036H11P028G071F1_030.ab1   352 
  403  C UCD034R_B04_BE500206Td04P036H11P028G071R1_030.ab1    83 
  407    UCD034F_B04_BE500206Td04P036H11P028G071F1_030.ab1   368 
  465  C UCD034R_B04_BE500206Td04P036H11P028G071R1_030.ab1    20 
  469    UCD034F_B04_BE500206Td04P036H11P028G071F1_030.ab1   430 
Contig length: old 558, new 558

Contig length: old 558, new 558
New start: 0