No. words: 1010; after pruning: 984


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:441)  425  0.00 0.23 0.23  UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1        1   442 (65)  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   (61)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   503 
   78    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1    16 
   82  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   422 
  162    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   100 
  166  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   338 
  194    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   132 
  198  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   306 
  222    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   160 
  226  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   278 
  338    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   276 
  342  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   162 
  386    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   324 
  398  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1   106 
  406    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   344 
  418  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1    86 
  422    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   360 
  426  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1    78 
  434    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   372 
  446  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1    58 
  450    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   388 
  458  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1    46 
  462    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   400 
  474  C UCD034R_D04_BE500206Td06P036H11P028G071R1_026.ab1    30 
  482    UCD034F_D04_BE500206Td06P036H11P028G071F1_026.ab1   420 
Contig length: old 568, new 569

Contig length: old 569, new 569
New start: 0