No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.8 (1,1:446)  427  0.00 0.45 0.00  UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1        1   443 (71)  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   (45)   448     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   493 
   70    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1    23 
   78  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   416 
  114    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1    67 
  126  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   368 
  194    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   147 
  198  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   296 
  306    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   259 
  310  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1   184 
  402    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   355 
  410  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1    84 
  418    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   371 
  442  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1    52 
  450    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   403 
  466  C UCD034R_E04_BE500206Td07P036H11P028G071R1_024.ab1    28 
  470    UCD034F_E04_BE500206Td07P036H11P028G071F1_024.ab1   423 
Contig length: old 560, new 561

Contig length: old 561, new 561
New start: 0