No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:446)  426  0.00 0.45 0.22  UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1        2   447 (66)  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   (53)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   500 
  126    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1    72 
  130  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   371 
  162    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   108 
  166  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   335 
  202    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   148 
  226  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   275 
  234    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   180 
  242  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1   259 
  398    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   344 
  446  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1    55 
  450    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   396 
  462  C UCD034R_G04_BE500206Td09P036H11P028G071R1_020.ab1    39 
  478    UCD034F_G04_BE500206Td09P036H11P028G071F1_020.ab1   424 
Contig length: old 566, new 567

Contig length: old 567, new 567
New start: 0