No. words: 901; after pruning: 875


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:322)  307  1.24 0.31 0.00  UCD019F_F02_BE500884LD08P028D04D101F1_006.ab1        1   323 (142)  C UCD019R_F02_BE500884LD08P028D04D101R1_006.ab1   (112)   324     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C UCD019R_F02_BE500884LD08P028D04D101R1_006.ab1   436 
  131    UCD019F_F02_BE500884LD08P028D04D101F1_006.ab1    18 
  147  C UCD019R_F02_BE500884LD08P028D04D101R1_006.ab1   290 
  164    UCD019F_F02_BE500884LD08P028D04D101F1_006.ab1    51 
  176  C UCD019R_F02_BE500884LD08P028D04D101R1_006.ab1   261 
  196    UCD019F_F02_BE500884LD08P028D04D101F1_006.ab1    83 
Contig length: old 578, new 578

Contig length: old 578, new 578
New start: 0