No. words: 989; after pruning: 963


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:323)  324  0.00 0.00 0.00  UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1        1   324 (146)  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   (195)   324     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   519 
  243    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1    48 
  247  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   273 
  259    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1    64 
  271  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   249 
  287    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1    92 
  339  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   181 
  343    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1   148 
  387  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1   133 
  395    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1   200 
  487  C UCD019R_B03_BE500884LD12P028D04D101R1_029.ab1    33 
  491    UCD019F_B03_BE500884LD12P028D04D101F1_029.ab1   296 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0