No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:593)  573  0.00 0.00 0.00  UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1        1   594 (63)  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   (62)   594     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   656 
   82    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1    20 
  122  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   535 
  126    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1    64 
  142  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   515 
  146    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1    84 
  158  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   499 
  166    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   104 
  190  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   467 
  194    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   132 
  454  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   203 
  462    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   400 
  466  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   191 
  506    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   444 
  534  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1   123 
  566    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   504 
  570  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1    87 
  574    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   512 
  610  C UCD024R_C01_BE517872AS01P028B04P028B101R1_011.ab1    47 
  618    UCD024F_C01_BE517872AS01P028B04P028B101F1_011.ab1   556 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0