No. words: 1150; after pruning: 1124


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 5.4 (1,1:593)  444  2.42 0.00 0.00  UCD024F_D01_BE517872AS02P028B04P028B101F1_009.ab1       99   594 (51)  C UCD024R_D01_BE517872AS02P028B04P028B101R1_009.ab1   (9)   496     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    UCD024F_D01_BE517872AS02P028B04P028B101F1_009.ab1     1 
  353  C UCD024R_D01_BE517872AS02P028B04P028B101R1_009.ab1   242 
  361    UCD024F_D01_BE517872AS02P028B04P028B101F1_009.ab1   361 
  381  C UCD024R_D01_BE517872AS02P028B04P028B101R1_009.ab1   214 
  389    UCD024F_D01_BE517872AS02P028B04P028B101F1_009.ab1   389 
  397  C UCD024R_D01_BE517872AS02P028B04P028B101R1_009.ab1   198 
  576    UCD024F_D01_BE517872AS02P028B04P028B101F1_009.ab1   576 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0 
S Change at: 585; seg lengths: entry 2, contig 2