No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:598)  575  0.00 0.00 0.00  UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1        1   599 (64)  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   (51)   599     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   650 
   67    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1    16 
  115  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   536 
  119    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1    68 
  135  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   516 
  151    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   100 
  155  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   496 
  159    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   108 
  207  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   444 
  215    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   164 
  247  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   404 
  391    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   340 
  527  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1   124 
  535    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   484 
  603  C UCD024R_E01_BE517872AT01P028B04P028B101R1_007.ab1    48 
  607    UCD024F_E01_BE517872AT01P028B04P028B101F1_007.ab1   556 
Contig length: old 714, new 714

Contig length: old 714, new 714
New start: 0