No. words: 1578; after pruning: 1552


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:635)  609  0.00 0.00 0.16  UCD024F_A02_BE517872LD03P028B04P028B101F1_016.ab1        1   636 (146)  C UCD024R_A02_BE517872LD03P028B04P028B101R1_016.ab1   (161)   635     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCD024R_A02_BE517872LD03P028B04P028B101R1_016.ab1   796 
  297    UCD024F_A02_BE517872LD03P028B04P028B101F1_016.ab1   136 
  733  C UCD024R_A02_BE517872LD03P028B04P028B101R1_016.ab1    64 
  737    UCD024F_A02_BE517872LD03P028B04P028B101F1_016.ab1   576 
  769  C UCD024R_A02_BE517872LD03P028B04P028B101R1_016.ab1    28 
  773    UCD024F_A02_BE517872LD03P028B04P028B101F1_016.ab1   612 
Contig length: old 942, new 943

Contig length: old 943, new 943
New start: 0