No. words: 1546; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:604)  557  1.16 0.00 0.17  UCD024F_B02_BE517872LD04P028B04P028B101F1_014.ab1        1   605 (166)  C UCD024R_B02_BE517872LD04P028B04P028B101R1_014.ab1   (171)   604     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD024R_B02_BE517872LD04P028B04P028B101R1_014.ab1   775 
  187    UCD024F_B02_BE517872LD04P028B04P028B101F1_014.ab1    16 
  191  C UCD024R_B02_BE517872LD04P028B04P028B101R1_014.ab1   585 
  276    UCD024F_B02_BE517872LD04P028B04P028B101F1_014.ab1   106 
  280  C UCD024R_B02_BE517872LD04P028B04P028B101R1_014.ab1   496 
  288    UCD024F_B02_BE517872LD04P028B04P028B101F1_014.ab1   118 
Contig length: old 941, new 941

Contig length: old 941, new 941
New start: 0 
S Change at: 134; seg lengths: entry 1, contig 1