No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.3 (1,1:634)  605  0.00 0.00 0.16  UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1        3   635 (145)  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1   (119)   632     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1   751 
  159    UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1    42 
  183  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1   569 
  187    UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1    70 
  199  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1   553 
  267    UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1   150 
  687  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1    65 
  695    UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1   578 
  703  C UCD024R_C02_BE517872LD05P028B04P028B101R1_012.ab1    49 
  727    UCD024F_C02_BE517872LD05P028B04P028B101F1_012.ab1   610 
Contig length: old 896, new 897

Contig length: old 897, new 897
New start: 0