No. words: 1563; after pruning: 1523


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:623)  588  0.00 0.16 0.32  UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1        1   624 (145)  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1   (171)   623     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1   794 
  641    UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1   470 
  685  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1   110 
  689    UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1   518 
  717  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1    78 
  733    UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1   562 
  761  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1    34 
  777    UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1   606 
  787  C UCD024R_D02_BE517872LD06P028B04P028B101R1_010.ab1     9 
  791    UCD024F_D02_BE517872LD06P028B04P028B101F1_010.ab1   620 
Contig length: old 939, new 940

Contig length: old 940, new 940
New start: 0