No. words: 1577; after pruning: 1551


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:637)  604  0.00 0.00 0.47  UCD024F_E02_BE517872LD07P028B04P028B101F1_008.ab1        1   640 (138)  C UCD024R_E02_BE517872LD07P028B04P028B101R1_008.ab1   (162)   637     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCD024R_E02_BE517872LD07P028B04P028B101R1_008.ab1   799 
  630    UCD024F_E02_BE517872LD07P028B04P028B101F1_008.ab1   468 
  730  C UCD024R_E02_BE517872LD07P028B04P028B101R1_008.ab1    70 
  734    UCD024F_E02_BE517872LD07P028B04P028B101F1_008.ab1   572 
  770  C UCD024R_E02_BE517872LD07P028B04P028B101R1_008.ab1    32 
  778    UCD024F_E02_BE517872LD07P028B04P028B101F1_008.ab1   616 
Contig length: old 939, new 940

Contig length: old 940, new 940
New start: 0