No. words: 1116; after pruning: 1090


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:514)  468  0.60 0.00 0.00  UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1        1   496 (0)  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   (105)   515    20 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   620 
  113    UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1     8 
  137  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   484 
  145    UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1    40 
  149  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   472 
  157    UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1    52 
  197  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   424 
  225    UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1   120 
  253  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   368 
  261    UCD018F_A09_BE518440LD02P028H03H091F1_079.ab1   156 
  337  C UCD018R_A09_BE518440LD02P028H03H091R1_079.ab1   284 
Contig length: old 620, new 620

Contig length: old 620, new 620
New start: 0