No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:497)  455  1.41 0.00 0.00  UCD018F_H09_BE518440LD09P028H03H091F1_065.ab1        1   498 (140)  C UCD018R_H09_BE518440LD09P028H03H091R1_065.ab1   (1)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1    UCD018F_H09_BE518440LD09P028H03H091F1_065.ab1     1 
  367  C UCD018R_H09_BE518440LD09P028H03H091R1_065.ab1   132 
  399    UCD018F_H09_BE518440LD09P028H03H091F1_065.ab1   399 
  415  C UCD018R_H09_BE518440LD09P028H03H091R1_065.ab1    84 
  419    UCD018F_H09_BE518440LD09P028H03H091F1_065.ab1   419 
  427  C UCD018R_H09_BE518440LD09P028H03H091R1_065.ab1    72 
  431    UCD018F_H09_BE518440LD09P028H03H091F1_065.ab1   431 
Contig length: old 639, new 638

Contig length: old 638, new 638
New start: 0