No. words: 1335; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:515)  484  0.00 0.00 0.39  UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1        1   517 (131)  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   (172)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   687 
  192    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1    20 
  204  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   484 
  224    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1    52 
  232  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   456 
  236    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1    64 
  264  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   424 
  296    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1   124 
  320  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1   368 
  380    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1   208 
  592  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1    96 
  608    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1   436 
  620  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1    68 
  636    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1   464 
  648  C UCD018R_A10_BE518440LD10P028H03H091R1_080.ab1    40 
  652    UCD018F_A10_BE518440LD10P028H03H091F1_080.ab1   480 
Contig length: old 819, new 820

Contig length: old 820, new 820
New start: 0