No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:490)  426  0.00 0.00 0.00  UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1       45   491 (65)  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1   (0)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1     1 
  104  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1   388 
  108    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   108 
  332  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1   160 
  392    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   392 
  396  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1    96 
  400    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   400 
  408  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1    84 
  412    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   412 
  416  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1    76 
  436    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   436 
  440  C UCD018R_B10_BE518440LD11P028H03H091R1_078.ab1    52 
  488    UCD018F_B10_BE518440LD11P028H03H091F1_078.ab1   488 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0