No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:512)  483  0.19 0.00 0.19  UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1        1   513 (68)  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   (44)   512     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   556 
   52    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1     8 
   81  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   476 
   85    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1    41 
   89  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   468 
   93    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1    49 
  105  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   452 
  109    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1    65 
  117  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   440 
  121    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1    77 
  137  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   420 
  153    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   109 
  193  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   364 
  201    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   157 
  385  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   172 
  397    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   353 
  409  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1   148 
  433    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   389 
  461  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1    96 
  473    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   429 
  485  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1    72 
  489    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   445 
  493  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1    64 
  505    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   461 
  509  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1    48 
  517    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   473 
  521  C UCD018R_C10_BE518440LD12P028H03H091R1_076.ab1    36 
  525    UCD018F_C10_BE518440LD12P028H03H091F1_076.ab1   481 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0