No. words: 965; after pruning: 939


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.5 (1,1:321)  310  0.00 0.31 0.31  UCD024F_B12_BE591555LD02P028G03P028G091F1_094.ab1        4   322 (196)  C UCD024R_B12_BE591555LD02P028G03P028G091R1_094.ab1   (128)   319     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1  C UCD024R_B12_BE591555LD02P028G03P028G091R1_094.ab1   447 
  333    UCD024F_B12_BE591555LD02P028G03P028G091F1_094.ab1   207 
Contig length: old 643, new 644

Contig length: old 644, new 644
New start: 0