No. words: 955; after pruning: 929


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.8 (1,1:312)  305  0.00 0.32 0.00  UCD024F_C12_BE591555LD03P028G03P028G091F1_092.ab1        4   313 (202)  C UCD024R_C12_BE591555LD03P028G03P028G091R1_092.ab1   (129)   311     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C UCD024R_C12_BE591555LD03P028G03P028G091R1_092.ab1   440 
  338    UCD024F_C12_BE591555LD03P028G03P028G091F1_092.ab1   211 
Contig length: old 642, new 642

Contig length: old 642, new 642
New start: 0