No. words: 1070; after pruning: 1044


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:22)  500  0.77 0.00 0.00  UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1       23   542 (0)    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1        1   520 (8) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1     1 
   34    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1    12 
   42    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1    42 
   46    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1    24 
   74    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1    74 
   78    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1    56 
   94    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1    94 
   98    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1    76 
  106    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   106 
  122    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   100 
  130    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   130 
  138    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   116 
  146    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   146 
  154    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   132 
  170    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   170 
  178    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   156 
  194    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   194 
  198    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   176 
  218    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   218 
  234    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   212 
  282    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   282 
  286    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   264 
  398    UCD005R_D02_BE604861AS01P012D04D101R1_010.ab1   398 
  416    UCD016R_B03_BE604861AS01P012D04D101R1_029.ab1   394 
Contig length: old 550, new 550

Contig length: old 550, new 550
New start: 0