No. words: 1305; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.2 -0.2 (1,1:-257)  160 11.43 0.00 0.00  UCD005F_A03_BE604861LD02P012D04D101F1_031.ab1        1   245 (0)    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1      258   502 (3) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    3

Chimera merges: 


Contig 2:  64 nodes

 34 str. conn. components

Path
    1    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1     1 
  309    UCD005F_A03_BE604861LD02P012D04D101F1_031.ab1    52 
  351    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1   351 
  355    UCD005F_A03_BE604861LD02P012D04D101F1_031.ab1    98 
  400    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1   400 
  404    UCD005F_A03_BE604861LD02P012D04D101F1_031.ab1   147 
  440    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1   440 
  444    UCD005F_A03_BE604861LD02P012D04D101F1_031.ab1   187 
  497    UCD005R_A03_BE604861LD02P012D04D101R1_031.ab1   497 
Contig length: old 505, new 505

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD016R_F03_BE604861LD02P012D04D101R1_021.ab1     1 
Contig length: old 555, new 555

Contig length: old 505, new 505
New start: 0 
S Change at: 262; seg lengths: entry 1, contig 1
S Change at: 269; seg lengths: entry 1, contig 1
S Change at: 277; seg lengths: entry 2, contig 2
S Change at: 282; seg lengths: entry 3, contig 3
S Change at: 292; seg lengths: entry 7, contig 7
S Change at: 302; seg lengths: entry 2, contig 2
S Change at: 373; seg lengths: entry 3, contig 3
S Change at: 493; seg lengths: entry 1, contig 1