No. words: 1423; after pruning: 1397


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.0 (1,1:644)  567  0.34 0.17 0.00  UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1       59   644 (191)  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1   (0)   588     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1     1 
  416  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1   230 
  464    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   464 
  468  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1   178 
  476    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   476 
  544  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1   102 
  548    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   548 
  560  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1    86 
  564    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   564 
  572  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1    74 
  580    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   580 
  616  C UCD005R_C10_BE605258LD01P012H02H081R1_076.ab1    30 
  620    UCD005F_C10_BE605258LD01P012H02H081F1_076.ab1   620 
Contig length: old 835, new 835

Contig length: old 835, new 835
New start: 0