No. words: 1603; after pruning: 1577


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.9 (1,1:645)  634  0.00 0.00 0.00  UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1        1   644 (190)  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   (123)   646     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   769 
  159    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1    36 
  163  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   607 
  175    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1    52 
  187  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   583 
  191    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1    68 
  195  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   575 
  231    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1   108 
  251  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   519 
  491    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1   368 
  631  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1   139 
  647    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1   524 
  723  C UCD005R_E10_BE605258LD03P012H02H081R1_072.ab1    47 
  727    UCD005F_E10_BE605258LD03P012H02H081F1_072.ab1   604 
Contig length: old 957, new 957

Contig length: old 957, new 957
New start: 0