No. words: 1098; after pruning: 1072


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.5 (1,1:491)  362  1.06 0.00 0.00  UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1      111   489 (227)  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1   (0)   382     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1     1 
  203  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1   290 
  211    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1   211 
  215  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1   278 
  227    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1   227 
  407  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1    86 
  411    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1   411 
  439  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1    54 
  451    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1   451 
  455  C UCD005R_F10_BE605258LD04P012H02H081R1_070.ab1    38 
  467    UCD005F_F10_BE605258LD04P012H02H081F1_070.ab1   467 
Contig length: old 716, new 716

Contig length: old 716, new 716
New start: 0