No. words: 1095; after pruning: 1069


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:383)  382  0.00 0.00 0.00  UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1        1   384 (154)  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1   (173)   384     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1   557 
  269    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1    96 
  281  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1   277 
  325    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   152 
  381  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1   177 
  461    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   288 
  469  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1    89 
  489    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   316 
  497  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1    61 
  501    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   328 
  517  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1    41 
  521    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   348 
  541  C UCD023R_F06_BE636802LD08P028H01P028H071R1_038.ab1    17 
  549    UCD023F_F06_BE636802LD08P028H01P028H071F1_038.ab1   376 
Contig length: old 711, new 711

Contig length: old 711, new 711
New start: 0