No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.5 (1,1:400)  392  0.00 0.25 0.00  UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1        1   397 (63)  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   (151)   402     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   553 
  180    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1    28 
  192  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   362 
  212    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1    60 
  216  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   338 
  224    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1    72 
  228  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   326 
  260    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   108 
  264  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1   290 
  468    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   316 
  472  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1    82 
  484    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   332 
  492  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1    62 
  496    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   344 
  520  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1    34 
  524    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   372 
  540  C UCD023R_B07_BE636802LD12P028H01P028H071R1_061.ab1    14 
  544    UCD023F_B07_BE636802LD12P028H01P028H071F1_061.ab1   392 
Contig length: old 612, new 612

Contig length: old 612, new 612
New start: 0