No. words: 972; after pruning: 946


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:399)  399  0.00 0.00 0.00  UCD023F_D07_BE636802LD14P028H01P028H071F1_057.ab1        1   400 (19)  C UCD023R_D07_BE636802LD14P028H01P028H071R1_057.ab1   (153)   400     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C UCD023R_D07_BE636802LD14P028H01P028H071R1_057.ab1   553 
  401    UCD023F_D07_BE636802LD14P028H01P028H071F1_057.ab1   248 
  409  C UCD023R_D07_BE636802LD14P028H01P028H071R1_057.ab1   145 
  485    UCD023F_D07_BE636802LD14P028H01P028H071F1_057.ab1   332 
  489  C UCD023R_D07_BE636802LD14P028H01P028H071R1_057.ab1    65 
  509    UCD023F_D07_BE636802LD14P028H01P028H071F1_057.ab1   356 
  525  C UCD023R_D07_BE636802LD14P028H01P028H071R1_057.ab1    29 
  549    UCD023F_D07_BE636802LD14P028H01P028H071F1_057.ab1   396 
Contig length: old 572, new 572

Contig length: old 572, new 572
New start: 0