No. words: 1008; after pruning: 969


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -1.0 -1.0 (1,1:-84)  175  7.05 0.41 0.00  UCD005F_A04_BF145580LD02P012E02E081F1_032.ab1        1   241 (242)    UCD005R_A04_BF145580LD02P012E02E081R1_032.ab1       85   326 (2) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    3

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    UCD005R_A04_BF145580LD02P012E02E081R1_032.ab1     1 
  118    UCD005F_A04_BF145580LD02P012E02E081F1_032.ab1    34 
  122    UCD005R_A04_BF145580LD02P012E02E081R1_032.ab1   122 
  126    UCD005F_A04_BF145580LD02P012E02E081F1_032.ab1    42 
  138    UCD005R_A04_BF145580LD02P012E02E081R1_032.ab1   138 
  142    UCD005F_A04_BF145580LD02P012E02E081F1_032.ab1    58 
  168    UCD005R_A04_BF145580LD02P012E02E081R1_032.ab1   169 
  172    UCD005F_A04_BF145580LD02P012E02E081F1_032.ab1    88 
Contig length: old 567, new 567

Contig length: old 567, new 567
New start: 0 
S Change at: 321; seg lengths: entry 1, contig 1