No. words: 1108; after pruning: 1069


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:-60)  170  8.95 0.78 0.00  UCD005F_D04_BF145580LD05P012E02E081F1_026.ab1        1   257 (275)    UCD005R_D04_BF145580LD05P012E02E081R1_026.ab1       60   318 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    3

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    UCD005R_D04_BF145580LD05P012E02E081R1_026.ab1     1 
  112    UCD005F_D04_BF145580LD05P012E02E081F1_026.ab1    51 
  116    UCD005R_D04_BF145580LD05P012E02E081R1_026.ab1   116 
  124    UCD005F_D04_BF145580LD05P012E02E081F1_026.ab1    63 
  128    UCD005R_D04_BF145580LD05P012E02E081R1_026.ab1   128 
  132    UCD005F_D04_BF145580LD05P012E02E081F1_026.ab1    71 
  144    UCD005R_D04_BF145580LD05P012E02E081R1_026.ab1   144 
  148    UCD005F_D04_BF145580LD05P012E02E081F1_026.ab1    87 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0