No. words: 1728; after pruning: 1676 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 2.1 (1,1:614) 134 0.67 0.67 0.67 UCD016F_D06_BF145580LD06P012E02E081F1_042.ab1 1 149 (0) C UCD016R_D06_BF145580LD06P012E02E081R1_042.ab1 (191) 615 467 * Pass: 3 #reads #contigs (not counting singlets) 1 2 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 0 1 0 Offset 1 1 Pass 4 Gap Score Merge:(0) 0 0.0 1.0 (1,1:-104) 119 8.29 1.10 0.00 UCD005F_E04_BF145580LD06P012E02E081F1_024.ab1 1 181 (305) UCD005R_E04_BF145580LD06P012E02E081R1_024.ab1 105 287 (0) * Pass: 4 #reads #contigs (not counting singlets) 2 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 0 1 0 Offset 0 1 Read equivalence class histogram: 2 2 Chimera merges: Contig 2: 66 nodes 35 str. conn. components Path 1 C UCD016R_D06_BF145580LD06P012E02E081R1_042.ab1 806 Contig length: old 806, new 806 Contig 1: 54 nodes 29 str. conn. components Path 1 UCD005R_E04_BF145580LD06P012E02E081R1_024.ab1 1 132 UCD005F_E04_BF145580LD06P012E02E081F1_024.ab1 28 142 UCD005R_E04_BF145580LD06P012E02E081R1_024.ab1 142 150 UCD005F_E04_BF145580LD06P012E02E081F1_024.ab1 46 179 UCD005R_E04_BF145580LD06P012E02E081R1_024.ab1 179 187 UCD005F_E04_BF145580LD06P012E02E081F1_024.ab1 83 Contig length: old 590, new 590 Contig length: old 806, new 806 New start: 0 Contig length: old 590, new 590 New start: 0