No. words: 835; after pruning: 809


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.9 -0.9 (1,1:608)  146  0.64 0.64 0.00  UCD016F_A07_BF145580LD11P012E02E081F1_063.ab1        1   156 (0)  C UCD016R_A07_BF145580LD11P012E02E081R1_063.ab1   (69)   610   454 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1  C UCD016R_A07_BF145580LD11P012E02E081R1_063.ab1   679 
   73    UCD016F_A07_BF145580LD11P012E02E081F1_063.ab1     4 
   89  C UCD016R_A07_BF145580LD11P012E02E081R1_063.ab1   591 
  111    UCD016F_A07_BF145580LD11P012E02E081F1_063.ab1    41 
  167  C UCD016R_A07_BF145580LD11P012E02E081R1_063.ab1   513 
  183    UCD016F_A07_BF145580LD11P012E02E081F1_063.ab1   113 
  187  C UCD016R_A07_BF145580LD11P012E02E081R1_063.ab1   493 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0