No. words: 980; after pruning: 940


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.8 (1,1:437)  412  0.23 0.00 0.46  UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1        4   439 (54)  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   (53)   434     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   487 
  137    UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1    87 
  141  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   347 
  252    UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1   202 
  268  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   220 
  284    UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1   234 
  300  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   188 
  332    UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1   282 
  356  C UCD031R_H03_BF145580Sn30P012E02P036F041R1_017.ab1   132 
  360    UCD031F_H03_BF145580Sn30P012E02P036F041F1_017.ab1   310 
Contig length: old 542, new 543

Contig length: old 543, new 543
New start: 0