No. words: 778; after pruning: 752


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:589)  113  1.42 1.42 1.42  UCD016F_A05_BF145580TU01P012E02E081F1_047.ab1        1   141 (0)  C UCD016R_A05_BF145580TU01P012E02E081R1_047.ab1   (47)   590   450 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C UCD016R_A05_BF145580TU01P012E02E081R1_047.ab1   637 
   80    UCD016F_A05_BF145580TU01P012E02E081F1_047.ab1    31 
   84  C UCD016R_A05_BF145580TU01P012E02E081R1_047.ab1   554 
   92    UCD016F_A05_BF145580TU01P012E02E081F1_047.ab1    43 
   96  C UCD016R_A05_BF145580TU01P012E02E081R1_047.ab1   542 
Contig length: old 637, new 637

Contig length: old 637, new 637
New start: 0