No. words: 967; after pruning: 941


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:427)  404  0.23 0.00 0.47  UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1        1   429 (47)  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   (64)   427     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   491 
  145    UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1    81 
  153  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   339 
  177    UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1   113 
  205  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   287 
  209    UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1   145 
  333  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   159 
  349    UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1   285 
  357  C UCD031R_E01_BF145580Ta11P012E02P036F041R1_007.ab1   135 
  389    UCD031F_E01_BF145580Ta11P012E02P036F041F1_007.ab1   325 
Contig length: old 539, new 540

Contig length: old 540, new 540
New start: 0