No. words: 975; after pruning: 949


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 0.6 (1,1:443)  413  0.23 0.45 0.23  UCD031F_F01_BF145580Ta12P012E02P036F041F1_005.ab1        4   444 (49)  C UCD031R_F01_BF145580Ta12P012E02P036F041R1_005.ab1   (40)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C UCD031R_F01_BF145580Ta12P012E02P036F041R1_005.ab1   482 
  272    UCD031F_F01_BF145580Ta12P012E02P036F041F1_005.ab1   233 
  276  C UCD031R_F01_BF145580Ta12P012E02P036F041R1_005.ab1   207 
  336    UCD031F_F01_BF145580Ta12P012E02P036F041F1_005.ab1   297 
  348  C UCD031R_F01_BF145580Ta12P012E02P036F041R1_005.ab1   135 
  368    UCD031F_F01_BF145580Ta12P012E02P036F041F1_005.ab1   329 
Contig length: old 531, new 532

Contig length: old 532, new 532
New start: 0