No. words: 1005; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.0 (1,1:452)  427  0.22 0.22 0.22  UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1        3   453 (51)  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   (50)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   501 
  147    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1    98 
  151  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   351 
  262    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   213 
  278  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   224 
  282    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   233 
  286  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   216 
  322    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   273 
  326  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   176 
  346    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   297 
  362  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   140 
  374    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   325 
  378  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   124 
  386    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   337 
  390  C UCD031R_H01_BF145580Ta14P012E02P036F041R1_001.ab1   112 
  398    UCD031F_H01_BF145580Ta14P012E02P036F041F1_001.ab1   349 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0