No. words: 977; after pruning: 951


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:434)  413  0.23 0.00 0.23  UCD031F_B02_BF145580Ta16P012E02P036F041F1_014.ab1        1   435 (60)  C UCD031R_B02_BF145580Ta16P012E02P036F041R1_014.ab1   (48)   434     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD031R_B02_BF145580Ta16P012E02P036F041R1_014.ab1   482 
  235    UCD031F_B02_BF145580Ta16P012E02P036F041F1_014.ab1   188 
  239  C UCD031R_B02_BF145580Ta16P012E02P036F041R1_014.ab1   244 
  409    UCD031F_B02_BF145580Ta16P012E02P036F041F1_014.ab1   362 
  417  C UCD031R_B02_BF145580Ta16P012E02P036F041R1_014.ab1    66 
  429    UCD031F_B02_BF145580Ta16P012E02P036F041F1_014.ab1   382 
  433  C UCD031R_B02_BF145580Ta16P012E02P036F041R1_014.ab1    50 
  465    UCD031F_B02_BF145580Ta16P012E02P036F041F1_014.ab1   418 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0