No. words: 1003; after pruning: 963


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.4 (1,1:451)  428  0.22 0.45 0.00  UCD031F_C02_BF145580Ta17P012E02P036F041F1_012.ab1        3   451 (51)  C UCD031R_C02_BF145580Ta17P012E02P036F041R1_012.ab1   (50)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD031R_C02_BF145580Ta17P012E02P036F041R1_012.ab1   501 
  262    UCD031F_C02_BF145580Ta17P012E02P036F041F1_012.ab1   212 
  318  C UCD031R_C02_BF145580Ta17P012E02P036F041R1_012.ab1   184 
  342    UCD031F_C02_BF145580Ta17P012E02P036F041F1_012.ab1   292 
  462  C UCD031R_C02_BF145580Ta17P012E02P036F041R1_012.ab1    40 
  466    UCD031F_C02_BF145580Ta17P012E02P036F041F1_012.ab1   416 
Contig length: old 551, new 552

Contig length: old 552, new 552
New start: 0