No. words: 997; after pruning: 971


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.6 (1,1:444)  418  0.23 0.23 0.23  UCD031F_H02_BF145580Ta22P012E02P036F041F1_002.ab1        4   445 (60)  C UCD031R_H02_BF145580Ta22P012E02P036F041R1_002.ab1   (50)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD031R_H02_BF145580Ta22P012E02P036F041R1_002.ab1   492 
  254    UCD031F_H02_BF145580Ta22P012E02P036F041F1_002.ab1   206 
  262  C UCD031R_H02_BF145580Ta22P012E02P036F041R1_002.ab1   231 
  278    UCD031F_H02_BF145580Ta22P012E02P036F041F1_002.ab1   230 
  330  C UCD031R_H02_BF145580Ta22P012E02P036F041R1_002.ab1   163 
  338    UCD031F_H02_BF145580Ta22P012E02P036F041F1_002.ab1   290 
  366  C UCD031R_H02_BF145580Ta22P012E02P036F041R1_002.ab1   127 
  370    UCD031F_H02_BF145580Ta22P012E02P036F041F1_002.ab1   322 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0