No. words: 1670; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:924)  733  0.13 0.00 0.00  UCD004F_G07_BF201830LD04P012B05B111F1_051.ab1       70   814 (0)  C UCD004R_G07_BF201830LD04P012B05B111R1_051.ab1   (0)   856   112 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    UCD004F_G07_BF201830LD04P012B05B111F1_051.ab1     1 
  373  C UCD004R_G07_BF201830LD04P012B05B111R1_051.ab1   553 
Contig length: old 925, new 925

Contig length: old 925, new 925
New start: 0 
S Change at: 93; seg lengths: entry 1, contig 1