No. words: 1408; after pruning: 1382


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:922)  458  1.65 0.00 0.00  UCD004F_H07_BF201830LD05P012B05B111F1_049.ab1      236   720 (0)  C UCD004R_H07_BF201830LD05P012B05B111R1_049.ab1   (0)   688   204 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1    UCD004F_H07_BF201830LD05P012B05B111F1_049.ab1     1 
  373  C UCD004R_H07_BF201830LD05P012B05B111R1_049.ab1   551 
  377    UCD004F_H07_BF201830LD05P012B05B111F1_049.ab1   377 
  389  C UCD004R_H07_BF201830LD05P012B05B111R1_049.ab1   535 
  397    UCD004F_H07_BF201830LD05P012B05B111F1_049.ab1   397 
  409  C UCD004R_H07_BF201830LD05P012B05B111R1_049.ab1   515 
  421    UCD004F_H07_BF201830LD05P012B05B111F1_049.ab1   421 
  425  C UCD004R_H07_BF201830LD05P012B05B111R1_049.ab1   499 
Contig length: old 923, new 923

Contig length: old 923, new 923
New start: 0