No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:983)  326  2.01 0.00 0.00  UCD004F_B08_BF201830LD07P012B05B111F1_062.ab1      374   721 (0)  C UCD004R_B08_BF201830LD07P012B05B111R1_062.ab1   (0)   611   264 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1    UCD004F_B08_BF201830LD07P012B05B111F1_062.ab1     1 
  509  C UCD004R_B08_BF201830LD07P012B05B111R1_062.ab1   476 
  517    UCD004F_B08_BF201830LD07P012B05B111F1_062.ab1   517 
  525  C UCD004R_B08_BF201830LD07P012B05B111R1_062.ab1   460 
  533    UCD004F_B08_BF201830LD07P012B05B111F1_062.ab1   533 
  541  C UCD004R_B08_BF201830LD07P012B05B111R1_062.ab1   444 
  557    UCD004F_B08_BF201830LD07P012B05B111F1_062.ab1   557 
  565  C UCD004R_B08_BF201830LD07P012B05B111R1_062.ab1   420 
Contig length: old 984, new 984

Contig length: old 984, new 984
New start: 0