No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.1 (1,1:912)  185  3.93 0.87 0.00  UCD004F_C08_BF201830LD08P012B05B111F1_060.ab1       21   249 (1)  C UCD004R_C08_BF201830LD08P012B05B111R1_060.ab1   (0)   895   665 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    UCD004F_C08_BF201830LD08P012B05B111F1_060.ab1     1 
   36  C UCD004R_C08_BF201830LD08P012B05B111R1_060.ab1   880 
   52    UCD004F_C08_BF201830LD08P012B05B111F1_060.ab1    51 
  145  C UCD004R_C08_BF201830LD08P012B05B111R1_060.ab1   770 
  167    UCD004F_C08_BF201830LD08P012B05B111F1_060.ab1   166 
  171  C UCD004R_C08_BF201830LD08P012B05B111R1_060.ab1   744 
  216    UCD004F_C08_BF201830LD08P012B05B111F1_060.ab1   215 
  220  C UCD004R_C08_BF201830LD08P012B05B111R1_060.ab1   695 
Contig length: old 913, new 914

Contig length: old 914, new 915
New start: 0 
I Change at: 82; seg lengths: entry 5, contig 4