No. words: 1284; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:965)  314  0.31 0.00 0.00  UCD004F_D08_BF201830LD09P012B05B111F1_058.ab1      391   708 (0)  C UCD004R_D08_BF201830LD09P012B05B111R1_058.ab1   (0)   576   259 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1    UCD004F_D08_BF201830LD09P012B05B111F1_058.ab1     1 
  527  C UCD004R_D08_BF201830LD09P012B05B111R1_058.ab1   440 
  535    UCD004F_D08_BF201830LD09P012B05B111F1_058.ab1   535 
  551  C UCD004R_D08_BF201830LD09P012B05B111R1_058.ab1   416 
  591    UCD004F_D08_BF201830LD09P012B05B111F1_058.ab1   591 
  595  C UCD004R_D08_BF201830LD09P012B05B111R1_058.ab1   372 
Contig length: old 966, new 966

Contig length: old 966, new 966
New start: 0